[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 158 items for (author: yang & tj)

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

EMDB-42944:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

EMDB-38650:
Additional map for SARS-CoV-2 Spike D614G variant, one RBD-up conformation 1 (PDB ID: 7EAZ; EMD-31047). Map was generated from heterogeneous refinement with downsampling in CryoSPARC
Method: single particle / : Yang TJ, Yu PY, Hsu STD

EMDB-40914:
Cryo-EM structure of cinacalcet-bound active-state human calcium-sensing receptor CaSR in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

EMDB-40915:
Cryo-EM structure of cinacalcet-bound human calcium-sensing receptor CaSR-Gq complex in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

EMDB-40916:
Cryo-EM structure of cinacalcet-bound human calcium-sensing receptor CaSR-Gi complex in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

EMDB-40917:
Cryo-EM structure of PAM-free human calcium-sensing receptor CaSR-Gi complex in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

EMDB-37752:
Structure of the DDB1-AMBRA1 E3 ligase receptor complex linked to cell cycle regulation
Method: single particle / : Liu M, Wang Y, Su MY, Stjepanovic G

PDB-8wqr:
Structure of the DDB1-AMBRA1 E3 ligase receptor complex linked to cell cycle regulation
Method: single particle / : Liu M, Wang Y, Su MY, Stjepanovic G

EMDB-37247:
CULLIN3-KLHL22-RBX1 E3 ligase
Method: single particle / : Su MY

PDB-8khp:
CULLIN3-KLHL22-RBX1 E3 ligase
Method: single particle / : Su MY, Su MY

EMDB-28728:
Structure of 3A10 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

EMDB-28729:
Structure of 1F04 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

EMDB-28730:
Structure of 3C08 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

EMDB-37266:
Cryo-EM structure of the KLHL22 E3 ligase bound to human glutamate dehydrogenase I
Method: single particle / : Su MY

PDB-8w4j:
Cryo-EM structure of the KLHL22 E3 ligase bound to human glutamate dehydrogenase I
Method: single particle / : Su MY, Su MY

EMDB-37235:
Human glutamate dehydrogenase I
Method: single particle / : Su MY

PDB-8kgy:
Human glutamate dehydrogenase I
Method: single particle / : Su MY

EMDB-33942:
Cryo-EM structure of MERS-CoV spike protein, Two RBD-up conformation 2
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-33943:
Cryo-EM structure of MERS-CoV spike protein, Two RBD-up conformation 1
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-33944:
Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 4
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-33945:
Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 3
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-33946:
Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-33947:
Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-33948:
Cryo-EM structure of MERS-CoV spike protein, intermediate conformation
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-33949:
Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation
Method: single particle / : Hsu STD, Chang NE, Weng ZW, Yang TJ, Draczkowski P

EMDB-29915:
CryoEM map of a de novo designed octahedral nanocage with programmable volume; design cage_O4_34
Method: single particle / : Kibler RD, Borst AJ

EMDB-40070:
Cryo-EM map of synthetic cage_O3_10 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40071:
Cryo-EM map of synthetic cage_O3_10 reconstructed with O symmetry
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40073:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 monomer missing (class 3.0)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40074:
Cryo-EM map of synthetic cage_T3_5 reconstructed with T symmetry
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40075:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40076:
Cryo-EM map of synthetic cage_T3_5+2 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40072:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 trimer missing (class 3.1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-29374:
Structure of SARS-CoV2 spike protein
Method: single particle / : Mou Z, Tan TJC, Lei R, Wu NC, Dai X

EMDB-29492:
Three-Dimensional Reconstruction of HCV Envelope Glycoproteins E1E2 Heterodimer by Electron Microscopic Analysis
Method: single particle / : Kanai T, Liang TJ

EMDB-29499:
Three-Dimensional Reconstruction of HCV Envelope Glycoproteins E1E2 Heterodimer by Electron Microscopic Analysis
Method: single particle / : Kanai T, Liang TJ

EMDB-34165:
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 1
Method: single particle / : Cai Y, Zhang H

EMDB-34166:
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 2
Method: single particle / : Cai Y, Zhang H

EMDB-34198:
Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Method: single particle / : Cai Y, Zhang H

PDB-8gni:
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 1
Method: single particle / : Cai Y, Zhang H

PDB-8gnj:
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 2
Method: single particle / : Cai Y, Zhang H

PDB-8gq5:
Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Method: single particle / : Cai Y, Zhang H

EMDB-25100:
Unmethylated Mtb Ribosome 50S with SEQ-9
Method: single particle / : Xing Z, Cui Z, Zhang J, TB Structural Genomics Consortium (TBSGC)

EMDB-27098:
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2
Method: single particle / : Yang K, Brunger AT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more